Celera Genomics Uses NI LabVIEW in Human Genome Sequencing
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Data Science Automation and Celera Genomics used LabVIEW to develop a piping system to sequence entire human genome.
Author(s):
Richard Brueggman -
Data Science Automation
Industry:
Biotechnology
Products:
LabVIEW, Database Connectivity Toolkit
The Challenge:
Developing an automated pipetting system to sequence entire human genome and other organisms.
The Solution:
Using NI LabVIEW software to automate pipetting robots that transer samples and despense reagents while processing initial E.coli clones, generating resultant templates and performing sequence chemistry in preparation for final base calling.
"Using the multithreading and various synchronization tools of LabVIEW, the application can handle complex simultaneous tasks, while the SQL toolkit can seamlessly integrate with the databases."
Data Science Automation in conjunction with Applied Biosystems assisted Celera Genomics, one of the leading sources of genomic information, with its goal to sequence the entire human genome and other organisms. Celera Genomics accomplished sequencing by automating pipetting robots using LabVIEW. The pipetting robots transfer samples and dispense reagents while processing initial E. coli clones, generating resultant templates, and performing sequence chemistry in preparation for final base calling. Pipetting tasks involve various loading and unloading steps, as well as ensuring correct volumes are aspirated and dispensed from appropriate sources. Each pipetting task needs to process a large number of plates.
Developing an Automated Pipetting System
Manual processing of these plates through the pipetting robots, despite the programmable sequences built into the robots, is very costly in terms of time and labor. To speed up the process, Celera Genomics decided to automate the pipetting system using LabVIEW as the development tool. With LabVIEW, Data Science Automation and Applied Biosystems engineers quickly developed a relatively large-scale application. Using the multithreading and various synchronization tools of LabVIEW, the application can handle complex simultaneous tasks, while the LabVIEW Database Connectivity (SQL) Toolkit can seamlessly integrate with the databases. In addition, we designed the application to add motion and vision functionalities if necessary. With LabVIEW vision and motion compatibility, we can extend this application easily.
Achieving Successful Results with LabVIEW
The automated pipetting system developed by Celera Genomics ensures the consistency of sequencing chemistry, reduces human error, and lowers the production time and cost of development. In addition, the login process further lowers the wasted plates and samples by making sure that only the authorized and properly trained operators can perform pipetting tasks. The plate information is now verified against the Celera laboratory database for type and process sequence verifications, which reduces accidental processing of incorrect plates and prevents another source of costly waste. We can also track sample and reagent volumes for more efficient use of reagents. For expensive reagents, tracking reduces wasted volumes and results in tremendous cost savings.
Currently, Celera Genomics uses the pipetting control system on most of their production pipetting systems. In addition, we are constantly improving the system as the role of pipetting robots expands and as Celera R&D and production efforts diversify.
Next Steps
Learn more about performing medical research with NI products.
Read about how LabVIEW is used for Biomedical Signal Analysis.
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